diff --git a/platform/javascript/detect.py b/platform/javascript/detect.py
index 67fa412f1df..84693db696d 100644
--- a/platform/javascript/detect.py
+++ b/platform/javascript/detect.py
@@ -198,6 +198,9 @@ def configure(env):
         # Workaround https://github.com/emscripten-core/emscripten/issues/19781.
         if cc_semver >= (3, 1, 42) and cc_semver < (3, 1, 46):
             env.Append(LINKFLAGS=["-Wl,-u,scalbnf"])
+        # Workaround https://github.com/emscripten-core/emscripten/issues/16836.
+        if cc_semver >= (3, 1, 47):
+            env.Append(LINKFLAGS=["-Wl,-u,_emscripten_run_callback_on_thread"])
 
     if env["gdnative_enabled"]:
         if cc_semver < (2, 0, 10):